Publications and Contributions to conferences

AgBioData publications:

• Hafner, A., DeLeo, V., Deng, C., Elsik, C. G., Fleming, D., Harrison, P. W., Kalbfleisch, T. S., Petry, B., Pucker, B., Quezada-Rodríguez, E. H., Tuggle, C. K., Koltes, J. (2024) Data Reuse in Agricultural Genomics Research: Present Challenges and Future Solutions. Preprints, 2024010780. PDF
   
• Clarke, J.L., Cooper, L.D., Poelchau, M.F., Berardini, T.Z., Elser, J., Farmer, A.D., Ficklin, S., Kumari, S., Laporte, M.A., Nelson, R.T., Sadohara, R. (2023) Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the AgBioData Consortium. Database, 1-16. PDF
   
• Deng, C.H., Naithani, S., Kumari, S., Cobo-Simon, I., Quezada-Rodriguez, E.H., Skrabisova, M., Gladman, N., Correll, M.J., Sikiru, A.B., Afuwape, O.O., Marrano, A., Rebollo, I., Zhang, W., Jung, S. (2023) Genotype and phenotype data standardization, utilization and integration in the big data era for agricultural sciences. Database, 1-17 PDF
   
• Saha, S., Cain, S., Cannon, E.K., Dunn, N. Farmer, A., Hu, Z., Maslen, G., Moxon, S., Mungall, C.J., Nelson, R., Poelchau, M.F. (2022). Recommendations for extending the GFF3 specification for improved interoperability of genomic data. arXiv.
   
• Harper, L., Campbell, J., Cannon, E.K., Jung, S., Poelchau, M., Walls, R., ... & Cannon, S. (2018). AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. Database, 1-32. PDF.
   
• Reiser, L., Harper, L., Freeling, M., Han, B., Luan, S. (2018). FAIR: A Call to Make Published Data More Findable, Accessible, Interoperable, and Reusable. Molecular Plant, 11(9):1105-1108. PDF.

AgBioData at conferences:

2024

• Marrano, A. "The AgBioData journey towards best practices of data sharing and management in agricultural research and education." Workshop "Plant Bioinformatics Resources for FAIR Agricultural Data Discovery and Reuse" at the Plant Biology 2024 Conference (June 21, 2024). Oral Presentation.

• Reiser, L. "Update: AgBioData Consortium." Workshop “Beyond the National Plant Genome Initiative: New Frontiers and Grand Challenges in Plant Genomics” at PAG 31 (January 14, 2024). Invited oral presentation.

2023

• O'Donnell, M. "Building a Community Lead FAIR Data Curriculum for Agricultural Biology Data." Research Data Access and Preservation (RDAP) Summit 2023 (March 28-30, 2023). Poster presentation. 

• Marrano, A., Campbell, D., Campbell, J., Cannon, E., Cooper, L., Harrison, P., Harper, L., Huala, E., Jung, S., Kumari, S., McNamara, J., Naithani, S., Poelchau, M., Reiser, L., Staton, M., Tello-Ruiz, M.K. "Can we make phenomic, genetic, and genomic data FAIR? The AgBioData road trip towards best practices of data sharing and management in agricultural research and education." The NAPPN Annual Conference 2023 (February 13-17, 2023). Poster presentation.

• Marrano, A. "The AgBioData Research Coordination Network: creating community-based standards for more findable, accessible, and reusable agricultural data". The Plant Bioinformatics Resources for FAIR Agricultural Data Discovery and Reuse Workshop at the Plant Biology conference 2023 (August 5-9, 2023). Invited oral presentation.

2022

• Reiser, L., Campbell, D., Campbell, J., Cannon, E., Cooper, L., Harper, L., Huala, E., Jung, S., Marrano, A., Poelchau, M., Staton, M., Tello-Ruiz, M.K. "The AgBioData Research Coordination Network: Ensuring FAIR agricultural data through community-based standards." AG2PI Workshop “Harnessing the Ag Genomics Data Torrent: A Community-driven Discussion on Best Practices for Using and Reusing Genomics Data” (February 9, 2022). Invited oral presentation.

• Marrano, A., Campbell, D., Campbell, J., Cannon, E., Cooper, L., Harper, L., Huala, E., Jung, S., Poelchau, M., Reiser, L., Staton, M., Tello-Ruiz, M.K., "The AgBioData Research Coordination Network: Ensuring FAIR agricultural data through community-based standards." The 2022 North American Plant Phenotyping Network Annual Conference (February 22-25, 2022). Oral presentation.

• Jung, S. "AgBioData: Reimagining a Sustainable Data Network to Accelerate Agricultural Research and Discovery." The Genomics Aotearoa seminar series (March 25, 2022).
  Invited seminar.

• Marrano, A., Campbell, D., Campbell, J., Cannon, E., Cooper, L., Harper, L., Huala, E., Kumari, S., Jung, S., Poelchau, M., Reiser, L., Staton, M., Tello-Ruiz, M.K. "The AgBioData Research Coordination Network: Ensuring FAIR agricultural data through community-based standards." The 2022 Plant Genome Online Conference (April 27-28, 2022). Oral presentation. 

• Marrano, A., Campbell, D., Campbell, J., Cannon, E., Cooper, L., Harper, L., Huala, E., Kumari, S., Naithani, S., Jung, S., Poelchau, M., Reiser, L., Staton, M., Tello-Ruiz, M.K. "The AgBioData Research Coordination Network: Ensuring FAIR agricultural data through community-based standards." The Arthropod Genomics Symposium 2022 (July 9-11, 2022). Poster presentation. 

• Marrano, A. "The AgBioData Research Coordination Network: creating community-based standards for more findable, accessible, and reusable agricultural data." The Bioinformatics Resources For Plant Biologists Workshop at the ASPB Plant Biology conference 2022 (July 9-13, 2022). Invited oral presentation.

• Jung, S. "Complementary Efforts By Other Databases, Initiatives and Networks to Facilitate Use of the Existing Genetic Diversity in the NPGS System and Other Collections (GDV, GDR, AgBioData)." The American Society for Horticultural Science 2022 Annual Conference (July 30-August 3, 2022). Oral presentation.